PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G071600.5
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 280aa    MW: 32676.4 Da    PI: 6.4257
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G071600.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS140.61.6e-4349273141374
                GRAS 141 slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevL 228
                         s++ T   ++ s++ + l+e ++ ++++ +++ v+f++++l a+++ d+  + Lr+++   +E ++V +v+qlh+ll    +le + d+vL
  Potri.004G071600.5  49 SFQYTSSRPKLSKNDDYLQENRRMITEVVQRFPVDFKYRALFADSVPDIVESVLRLERtseDEIIIVRWVFQLHKLL----ALEGAVDKVL 135
                         666666666666689999*******************************999998877778***************9....55555666** PP

                GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                         + +k+l+P+++v+veqead n+ +F+ rf+++++yy +lf+sle    +++      Er+ l+++i+nvva eg er+erhetl++W++rl
  Potri.004G071600.5 136 SKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLSLFESLELY--ATNLSSLIWERH-LRWQICNVVASEGIERIERHETLARWQQRL 223
                         *******************************************998..689999999*99.****************************** PP

                GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           a F +v+l ++  ++    l  ++   y++ee+sg  vl   ++pL+++S+W+
  Potri.004G071600.5 224 YGARFCSVSLCSNQFAD---FLYDFP--AYKIEENSGFPVLLAAGHPLIFASVWK 273
                         **********9876655...566666..7*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.351258IPR005202Transcription factor GRAS
PfamPF035145.6E-4149273IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSTDYAIRDV LNVKKNKLHL IEISSLVDFW QRRSLEEFLL HGHHGMPLSF QYTSSRPKLS  60
KNDDYLQENR RMITEVVQRF PVDFKYRALF ADSVPDIVES VLRLERTSED EIIIVRWVFQ  120
LHKLLALEGA VDKVLSKLKD LKPDIMVIVE QEADNNTDDF FYRFASSFKY YLSLFESLEL  180
YATNLSSLIW ERHLRWQICN VVASEGIERI ERHETLARWQ QRLYGARFCS VSLCSNQFAD  240
FLYDFPAYKI EENSGFPVLL AAGHPLIFAS VWKPANAAH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G071600.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454357.10.0DELLA protein GAIP isoform X2
TrEMBLA0A2I4KKT30.0A0A2I4KKT3_POPTR; GRAS family protein
TrEMBLA0A3N7EU440.0A0A3N7EU44_POPTR; Uncharacterized protein
TrEMBLA0A3N7G5B80.0A0A3N7G5B8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07000.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.19e-36GRAS family protein