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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.004G078800.1 |
| Common Name | POPTR_0004s07700g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 670aa MW: 73684.8 Da PI: 6.3336 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G078800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 354.5 | 1.7e-108 | 293 | 669 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+++++e+A a+ +g++ +++L+r+s +sp g++ qRl+ y++ AL++rl++s ++ ++ e s+e++ a++l++++sP++k
Potri.004G078800.1 293 KQTVIEAASAIYEGKTDVYTEILTRVSLVSSPGGNSEQRLIEYMLMALKSRLNSSENT----TSVMEL---YSKEHVDATQLLYDLSPCFK 376
57899************************************************92222....222233...388999************** PP
GRAS 93 fshltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg.skeeleetgerLakfAeelg 173
+++++aN aI +a+ ++ + H++Dfdi++G+Q+ +Ll+aL+ ++++p+ ++iT+v++ ++g ++e+l+ +ge L+++A+++g
Potri.004G078800.1 377 LGFMAANLAIIDATREQeqeantssNGFHVVDFDIGHGGQYKNLLHALSgLQNSKPAIVKITAVAADSNGvEEERLRLVGETLTQLARRVG 467
*************988766555444456*********************66668888*********99999******************** PP
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
+++ fnv v+ +l++l+ e+L ++p+EalaVn++++l+r++desvs+++ +rde+L+ vk+l P+vv+vveqe+++n+++F++r+ e+++y
Potri.004G078800.1 468 LNLCFNV-VSCKLSELTRESLGCEPDEALAVNFAFKLYRMPDESVSSTEnPRDELLRRVKGLAPRVVTVVEQEMNTNTAPFMARVNESCSY 557
******9.7999********************************987766***************************************** PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352
y alfds+e+++ +++er+kvE+ lgr+ vn vaceg++r+er+e ++kWr+r+++aGF+ pls+++a+++k+ l+ + + g++v+
Potri.004G078800.1 558 YGALFDSIESTVKGDNSERAKVEEG-LGRRMVNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLSHNIAESMKTRLSLANrvNPGFSVK 647
*************************.***************************************************9999887889**** PP
GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
ee+g +++gW++++L+++SaWr
Potri.004G078800.1 648 EENGGVCFGWMGKTLTVASAWR 669
*********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 670 aa
Download sequence Send
to blast |
MASGFSGGGG GGGGGVQDFY TNRSPIIPTM NLTNNHHNPS SLPPYRTNQI FLDQNLSSHN 60
YQQIAQHRAI FPTTTATTTL IGKRTLADFQ AFQQSPPQQN LLNQAALNNL LLRSVKPRIN 120
NNIFQQNTSP ISTLDFSVSN LSPELPSLMS QRYGLPLLQQ LRPQHHQQHQ QQQPMNLISP 180
IGIINNNRSS NNSMMPYVNM LQNQNGGGNG IVMGQDREKK MLNQLQELEK QLLDDDDDNQ 240
EGDAVSVITN TNSEWSETIH NLITSSSCNN PISPSPTSSS SSSFSTVTTP VSKQTVIEAA 300
SAIYEGKTDV YTEILTRVSL VSSPGGNSEQ RLIEYMLMAL KSRLNSSENT TSVMELYSKE 360
HVDATQLLYD LSPCFKLGFM AANLAIIDAT REQEQEANTS SNGFHVVDFD IGHGGQYKNL 420
LHALSGLQNS KPAIVKITAV AADSNGVEEE RLRLVGETLT QLARRVGLNL CFNVVSCKLS 480
ELTRESLGCE PDEALAVNFA FKLYRMPDES VSSTENPRDE LLRRVKGLAP RVVTVVEQEM 540
NTNTAPFMAR VNESCSYYGA LFDSIESTVK GDNSERAKVE EGLGRRMVNS VACEGRDRVE 600
RCEVFGKWRA RMGMAGFELK PLSHNIAESM KTRLSLANRV NPGFSVKEEN GGVCFGWMGK 660
TLTVASAWR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
