PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G088100.2
Common NamePOPTR_0004s08650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 236aa    MW: 26068.4 Da    PI: 9.5071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G088100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.4e-101350148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+t+Ed++l+d+++ +G g          ++R++k+c++rw +yl
  Potri.004G088100.2 13 KGAWSTQEDQKLIDYIQTHGEG----------LHRCGKSCRLRWINYL 50
                        79******************99..........79************97 PP
2Myb_DNA-binding52.89.4e-1756101148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Potri.004G088100.2  56 RGNFGQDEEDLIIKLHALLGNR-WALIAGRLP-GRTDNEVKNYWNSHL 101
                         899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-15452IPR009057Homeodomain-like
PROSITE profilePS512948.012850IPR017930Myb domain
SuperFamilySSF466894.59E-241197IPR009057Homeodomain-like
SMARTSM007171.6E-51252IPR001005SANT/Myb domain
PfamPF002496.6E-81350IPR001005SANT/Myb domain
PROSITE profilePS5129425.8751105IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2653106IPR009057Homeodomain-like
SMARTSM007176.2E-1655103IPR001005SANT/Myb domain
PfamPF002492.2E-1556101IPR001005SANT/Myb domain
CDDcd001678.78E-1258101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRKPCCDKQG NNKGAWSTQE DQKLIDYIQT HGEGLHRCGK SCRLRWINYL RPDIKRGNFG  60
QDEEDLIIKL HALLGNRWAL IAGRLPGRTD NEVKNYWNSH LKKKLINMGI DPNNHRLNQI  120
LPRLQAEPAA PVIAISTTTG SKNNVAASKP KNLSNGDSDR VSDTATCLED EYESLVTQQA  180
ATSGSSSINI DLNIAAPASP GHRTTFGNKQ QNCKLGKTSQ VERDPSSLPT LLLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251210526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G088100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7233920.0KP723392.1 Populus tremula x Populus tremuloides clone INRA 353-38 R2R3 MYB flavonoid repressor protein (MYB182) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305872.11e-172transcription repressor MYB6
TrEMBLB9H3971e-170B9H397_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08650.11e-171(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-65myb domain protein 6