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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.004G089800.2 |
| Common Name | POPTR_0004s08890g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 432aa MW: 46764.4 Da PI: 5.5619 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.004G089800.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 454 | 9.6e-139 | 60 | 423 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
lv++Ll+cAea+++++l+la+al++++ la+++ +m+++a+yf+eALa+r+++ ++ y + ++s s++l + f+e++P+l
Potri.004G089800.2 60 LVHTLLACAEAIQQENLKLADALVKHIGLLAASQTGAMRKVATYFAEALARRIYKIFPQDY----CLDSS---CSDTLEM--HFYETCPYL 141
689****************************************************444333....44444...5556555..5******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
kf+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v
Potri.004G089800.2 142 KFAHFTANQAILEAFANASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVEFEFRGFV 232
******************************************************************************************* PP
GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
a++l+dl+ e+L + p Ea+aVn+v++lhrll +++ +++ vL+ +k ++Pk+v++veqea+hn++ Fl+rf+eal+yys+lfdsl
Potri.004G089800.2 233 ANSLADLDAEMLGLLPpeVEAVAVNSVFELHRLLGRPGGIDK----VLESIKAMRPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSL 319
**************998899**************88888888....********************************************* PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
e + + +++ ++++ +lgr+i+nvvacega+r+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lg
Potri.004G089800.2 320 EGSGLTPPSQDLVMSELYLGRHICNVVACEGADRVERHETLAQWRTRFDSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLG 410
877666668999999**************************************************************************** PP
GRAS 362 WkdrpLvsvSaWr 374
W++rpL+++SaW+
Potri.004G089800.2 411 WHTRPLIATSAWQ 423
************6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0010187 | Biological Process | negative regulation of seed germination |
| GO:0042538 | Biological Process | hyperosmotic salinity response |
| GO:2000033 | Biological Process | regulation of seed dormancy process |
| GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 432 aa
Download sequence Send
to blast |
MKLTPIGSNI APAPSVNSLQ SPTASSTSSS SPQAMAVSGT LSEPTRPVVL VDSQETGVRL 60
VHTLLACAEA IQQENLKLAD ALVKHIGLLA ASQTGAMRKV ATYFAEALAR RIYKIFPQDY 120
CLDSSCSDTL EMHFYETCPY LKFAHFTANQ AILEAFANAS RVHVIDFGLK QGMQWPALMQ 180
ALALRPGGPP AFRLTGIGPP QPDNTDALQQ VGWKLAQLAQ TIGVEFEFRG FVANSLADLD 240
AEMLGLLPPE VEAVAVNSVF ELHRLLGRPG GIDKVLESIK AMRPKIVTIV EQEANHNGPV 300
FLDRFTEALH YYSSLFDSLE GSGLTPPSQD LVMSELYLGR HICNVVACEG ADRVERHETL 360
AQWRTRFDSA GFDPVHLGSN AFKQASMLLA LFAGGDGYRV EENNGCLMLG WHTRPLIATS 420
AWQLAAGDSQ Q*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
