PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G090900.1
Common NamePOPTR_0004s09000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GeBP
Protein Properties Length: 349aa    MW: 38850.7 Da    PI: 9.3593
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G090900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57381.99.1e-2674169297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                         +f+r+wse Dei++LqGl++  +++g s  +d+  fy+ +++s+s  ++ksql+eK+rrL+kKf+  +++ a++g + s+ ++hd++ f+l
  Potri.004G090900.1  74 KFHRIWSEPDEISFLQGLLSS-SSQGLSFPKDLPFFYDRFSNSMSQPYTKSQLSEKMRRLRKKFRSTSSRlARNGFNYSLLSPHDRSLFDL 163
                         699****************98.889*9*99****************************************88999**************** PP

              DUF573  92 skkiWg 97 
                         sk++W 
  Potri.004G090900.1 164 SKQLWS 169
                         *****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-2875169IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDSTPVPQHL PFKPSSSSSA SKLPIKRKTP DSLHHHHLLS PKLETSSTTT PTTTNPDAIS  60
TPTTNSESKP PPFKFHRIWS EPDEISFLQG LLSSSSQGLS FPKDLPFFYD RFSNSMSQPY  120
TKSQLSEKMR RLRKKFRSTS SRLARNGFNY SLLSPHDRSL FDLSKQLWSP EFASSSPFGG  180
NKSTGSNSNS NFDGNVSSFR PDNVKRTKLD EDLVGVKGSF LPVFALPCEN VNVSNELNDL  240
ESLDLDEFDD GYVVKMREGN VGWEVDKGVS GCGGGCGSVA VKSVAKSVLN VFDECVKEVK  300
KVVLKERLDS SMEGKKEKDF QRRWREQRVA EFDVLALRLR LLLDNSAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G090900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454750.10.0probable transcription factor At5g28040
RefseqXP_024454751.10.0probable transcription factor At5g28040
TrEMBLA0A2K2AS020.0A0A2K2AS02_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1654199
Representative plantOGRP9800912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-11DNA-binding storekeeper protein-related transcriptional regulator