PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G095100.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 331aa    MW: 36730.9 Da    PI: 8.4067
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G095100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH482e-15255280126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ +++tGtC+yG+ C+FaHg
  Potri.004G095100.2 255 WKTELCNKWQETGTCPYGNHCQFAHG 280
                         8************************8 PP
2zf-CCCH231.4e-07293318126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  Cr  +++G C+yG rC+F H+
  Potri.004G095100.2 293 YKTQACRMVLAGGVCPYGHRCHFRHS 318
                         9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-11251286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-18251287IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-9254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234254282IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-12255280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-12288321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9288322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272292320IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5292319IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-5293318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEKTESPPSD SKTAAQSPPF DCHQANDHDQ FASNFTSLYH SIFPPKPSQL PNSLSFTPST  60
TASPSSSSAA DEISTENRLR QARLILEYQD LCDHYNLSLA RLQTLTNELE LIRRENADLR  120
VTNSELVKLI SLSSEAAVMQ HQNRTFGNNR DVAFERRNNA NNVERERVTL PKSISVRSSG  180
FVKVNQAVSG NVSNNGGGRG SASSNSTWSR VASQHDQLVS GSMQQRVYVP GGGKKRSEEE  240
IAAGMELEVF NQGMWKTELC NKWQETGTCP YGNHCQFAHG IGELRPVIRH PRYKTQACRM  300
VLAGGVCPYG HRCHFRHSLT DQERLLLGPR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22255318467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G095100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090410.0AC209041.1 Populus trichocarpa clone POP051-F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454735.10.0zinc finger CCCH domain-containing protein 14 isoform X4
TrEMBLA0A2K2AS840.0A0A2K2AS84_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-70C3H family protein