PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G099400.2
Common NamePOPTR_0004s09850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 270aa    MW: 30357.3 Da    PI: 8.3536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G099400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.2e-10161208455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+++Er RR++iN+++  L++++P +    +k +  a +Le+ ++Y++sLq
  Potri.004G099400.2 161 SHSIAERIRREKINNKLRCLQDIVPGC----HKSMGMAVMLEEIINYVHSLQ 208
                         8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.78E-10155212No hitNo description
SuperFamilySSF474591.01E-16155223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.913157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-16157219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-9163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAEFAEYLQR LGASQPLTEM MDMNMEMLKH LPELNPSILE NFSITHDFSA DSFFAHQQPE  60
FPATYNHNKL SSTSHPHILS TAPLVHSVSL NQNVFHERKK PKAMEQSTGS SKNVSPTASI  120
NITEKKNNLG RGKKGKNKEK EGDKSKEVIH VRAKRGQATD SHSIAERIRR EKINNKLRCL  180
QDIVPGCHKS MGMAVMLEEI INYVHSLQNQ VEFLSMELAA ASCSNDLKNL TESSKKAQGT  240
NSTDDAQETQ KWSRERYGEI TCFHSTWSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G099400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454935.10.0transcription factor BEE 1
TrEMBLA0A2K2ASF70.0A0A2K2ASF7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09850.11e-178(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-45BR enhanced expression 1