PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G099600.1
Common NamePOPTR_0004s09870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 189aa    MW: 21962.8 Da    PI: 9.7557
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G099600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53e-1071179294
                         EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..........EEETTEEEE-TTH.HHHHH CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliy........rkksgryvltkGW.keFvk 70 
                         +k+++psd ++++rl +p + +e++             +++++ + ++++ d + +                + +s++y++ +GW k+Fv+
  Potri.004G099600.1  71 KKKMKPSDLGNLCRLLVPSDLVEKYilpflntdqikqvNQETNLGLKVSVWDMNTQ-------SmhqlvfkrWSTSRSYIFNDGWtKDFVR 154
                         699*************************8877666555334445555555554444.......223333345*************557*** PP

                         HHT--TT-EEEEEE-SS.SEE..EE CS
                  B3  71 angLkegDfvvFkldgr.sefelvv 94 
                           +L egD + ++ d   s+f+++v
  Potri.004G099600.1 155 RRNLVEGDEIGLYWDTYhSRFNFNV 179
                         *********9999776556664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-1667178IPR015300DNA-binding pseudobarrel domain
CDDcd100177.23E-1768181No hitNo description
Gene3DG3DSA:2.40.330.102.5E-1769179IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.002570183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEKHGGFGRG EVPWNQPRNK ESAEELERSR VAFNLRRMRT SYTLGDLLEE SSRGVSTHLS  60
LYHHYDPFTI KKKMKPSDLG NLCRLLVPSD LVEKYILPFL NTDQIKQVNQ ETNLGLKVSV  120
WDMNTQSMHQ LVFKRWSTSR SYIFNDGWTK DFVRRRNLVE GDEIGLYWDT YHSRFNFNVL  180
SRAAAAAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G099600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305818.11e-140B3 domain-containing protein At2g33720
TrEMBLB9H2Z81e-139B9H2Z8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09870.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Representative plantOGRP782034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-31B3 family protein