PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G100100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 298aa    MW: 31932.3 Da    PI: 7.6774
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G100100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.66.1e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ 
  Potri.004G100100.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWP 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l+++
  Potri.004G100100.1  95 LCQAAVEAVLRGA 107
                         *******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.7E-941296IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.9643109IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWPLCQAAV EAVLRGASIT QINSETAANA  120
QGPPLKAYDI RHVSKDENSA ASNDANRVRT RCRVRRVVKP KASKPACGGN GLGSIVVDMS  180
ATRDGLTRST SHESSVSHQS ELAMVDGESK ETDESMMSVE TAEDSLLFRS EPESKSDLAT  240
HDAASNEIAG LGLDLALGLE PVSRAHHVVP VKKRRIEALG SGDIDTCKME LGLDYAA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G100100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454537.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-107LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K2ASG40.0A0A2K2ASG4_POPTR; Uncharacterized protein
STRINGcassava4.1_012667m1e-171(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-94LOB domain-containing protein 41