PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G100100.2
Common NamePOPTR_0004s09920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 222aa    MW: 23875.5 Da    PI: 9.1878
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G100100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.63.1e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ 
  Potri.004G100100.2   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWSGSWP 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l+++
  Potri.004G100100.2  95 LCQAAVEAVLRGA 107
                         *******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9643109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWPLCQAAV EAVLRGASIT QINSETAANA  120
QGPPLKAYDI RHVSKDENSA ASNDANRVRT RCRSRVLGES PIRVGNGGRN EIAGLGLDLA  180
LGLEPVSRAH HVVPVKKRRI EALGSGDIDT CKMELGLDYA A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.89361e-161stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G100100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442341e-158EF144234.1 Populus trichocarpa clone PX0011_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035061.11e-110PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8864e-96LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K2ASG41e-103A0A2K2ASG4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s09920.11e-161(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-93LOB domain-containing protein 41