PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G108300.5
Common NamePOPTR_0004s10800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 252aa    MW: 27272.9 Da    PI: 4.7959
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G108300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-071560241
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        ++r+C+++   + + +C+ ++ +lC+ C    H        H++v+
  Potri.004G108300.5 15 RARVCDTCRAAPCTVYCRADSAYLCAGCDARVHAAnrvasrHERVS 60
                        6899*****************************6577888898887 PP
2zf-B_box28.43.4e-0959104342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           +C+ +e+ ++ l C+ +   lC  C   +H+       H++vp+
  Potri.004G108300.5  59 VSVCEACERAPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 104
                         579*****************************66899999**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.4621461IPR000315B-box-type zinc finger
SMARTSM003361.4E-101461IPR000315B-box-type zinc finger
PfamPF006436.1E-61560IPR000315B-box-type zinc finger
CDDcd000211.80E-61761No hitNo description
PROSITE profilePS5011911.5957104IPR000315B-box-type zinc finger
PfamPF006432.6E-759104IPR000315B-box-type zinc finger
CDDcd000212.67E-761104No hitNo description
SMARTSM003363.8E-1062104IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLKQESSGGG GGDNRARVCD TCRAAPCTVY CRADSAYLCA GCDARVHAAN RVASRHERVS  60
VCEACERAPA ALLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGC LHGSPVGPAA  120
GETEDRFTTQ EGEETISEEE EDEAASWLLL NPVKNSKNQN NNGFLFGGEV DEYLDLVEYN  180
SCTENQCSDQ YNQQHYCVPP KSYGGDRAVP IQYGEGKDHQ QQRQYHNFQL GLEYEPSKAA  240
CSYNGSISQS V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.128280.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G108300.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169130.0AC216913.1 Populus trichocarpa clone POP030-J10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447845.10.0zinc finger protein CONSTANS-LIKE 2
RefseqXP_024454227.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965022e-82COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLB9H3V00.0B9H3V0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s10800.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.25e-67B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]