PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G128400.1
Common NamePOPTR_0004s13380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 91aa    MW: 10414.9 Da    PI: 9.3344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G128400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-0823572054
                        HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         ++Lr+llP+ + + +s K+s + +L+++++YIk+L
  Potri.004G128400.1 23 VSKLRQLLPEiR-QRRSDKVSASKVLQETCNYIKNL 57
                        589*******77.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.645357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-9976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-81773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-52157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRQSS VPRITDDQII HLVSKLRQLL PEIRQRRSDK VSASKVLQET CNYIKNLHRE  60
VDDLSERLSQ LLATIDSDSP EAEIIRSLIM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12636RQLLPEIRQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.93191e-154leaf
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G128400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474931e-146EF147493.1 Populus trichocarpa clone WS01231_N01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305320.11e-56transcription factor PRE1
SwissprotQ9LJX13e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLB9H3X13e-55B9H3X1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s13380.15e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.14e-40bHLH family protein