PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G134400.1
Common NamePOPTR_0004s14200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 386aa    MW: 43719.1 Da    PI: 6.7278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G134400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-09425325
                        S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                        +++C++fa+ G C++Gd CkF H
  Potri.004G134400.1  4 RKPCKYFAQ-GACWRGDHCKFVH 25
                        79*******.************* PP
2zf-CCCH24.16.4e-083657426
                        ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                          C f+++ G C yG+rCk+ H+
  Potri.004G134400.1 36 NVCTFYQK-GNCTYGSRCKYEHV 57
                        57******.***********997 PP
3zf-CCCH26.98.5e-0999122226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++lC+ f   G C++Gd+C+F Hg
  Potri.004G134400.1  99 DRPLCS-FDVAGDCPHGDKCSFVHG 122
                         689***.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.432128IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5227IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-7325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-7430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.143259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-63356IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-53358IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-63557IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-43756IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.71897124IPR000571Zinc finger, CCCH-type
SMARTSM003560.02998123IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-699122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4105122IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.52E-14156226No hitNo description
Gene3DG3DSA:3.30.40.107.1E-12159223IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136393.6E-7165220IPR001841Zinc finger, RING-type
CDDcd001622.19E-5165222No hitNo description
PROSITE profilePS5008912.578166220IPR001841Zinc finger, RING-type
SMARTSM001841.7E-8166219IPR001841Zinc finger, RING-type
PROSITE patternPS005180190199IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.103249278IPR000571Zinc finger, CCCH-type
SMARTSM003560.18249277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSQRKPCKYF AQGACWRGDH CKFVHERKEP QPLSRNVCTF YQKGNCTYGS RCKYEHVKTS  60
WVASGGAAGA SSSSSPHQSV ILSSVPASVG SSRDGKKEDR PLCSFDVAGD CPHGDKCSFV  120
HGDLCPTCGK HSLHPFQADE REEHLKSCEK NQKFLVAVKR SEEIECSVCL DRVLSKPTAA  180
ERKFAVLPEC NHPFCISCIR NWRNGSPASG MALRACPICR KTSHFVIPSL IWYSSKEEKQ  240
EIIDTYKARL RQIDCKHFNF GNGNCPFGIN CFYKHTVMPG SYTWKHHKPP PRRPPPRRRS  300
NAGHADSSFD YFGPTMEDLL DMFDDDYLDY DNYCDPFHEE YQLDIFDYED YFDEERLSPF  360
DMALLLAGMD CGGASDISSD EDDFY*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G134400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455057.10.0E3 ubiquitin-protein ligase makorin isoform X2
SwissprotQ6IDS61e-111C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2K2AU450.0A0A2K2AU45_POPTR; C3H family protein
STRINGPOPTR_0004s14200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821133
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-111C3H family protein