PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G138000.1
Common NamePOPTR_0004s14510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 320aa    MW: 35799.1 Da    PI: 8.2604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G138000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+lv+++k  G g+W++ ++  g+ R++k+c++rw +yl
  Potri.004G138000.1 14 KGAWTKEEDERLVNYIKAQGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding57.72.7e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++ eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Potri.004G138000.1  67 RGNFSDEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.417961IPR017930Myb domain
SMARTSM007172.5E-121363IPR001005SANT/Myb domain
SuperFamilySSF466892.52E-2813108IPR009057Homeodomain-like
PfamPF002495.3E-141461IPR001005SANT/Myb domain
CDDcd001672.53E-91661No hitNo description
PROSITE profilePS5129428.56562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2865116IPR009057Homeodomain-like
SMARTSM007171.3E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1667111IPR001005SANT/Myb domain
CDDcd001671.43E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLVNYIK AQGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SDEEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLFTRG  120
IDPQTHRPLK STTTTTSSST TTTTTTNSTN NKNSKLDTKR STDFQLEEQN YSFLQVQPEF  180
TMSNMTKTEN NSSIIKVGGS SDSAEDSNSS SGVTTELEVY PDHKLVNLEL SIGLPCQSLV  240
SSMNNLKQAK QQEQEEVVTH QLFETSTTPT SSAPVSVHKA ACLCYKLGFK NSQACSSCNA  300
MEKTVTADNL HRFYRPLDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28141187110B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G138000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384381.10.0myb-related protein 308
SwissprotP813931e-89MYB08_ANTMA; Myb-related protein 308
TrEMBLB9N5A70.0B9N5A7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s14510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-86myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]