PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G140600.9
Common NamePOPTR_0004s14790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 415aa    MW: 45326.6 Da    PI: 10.027
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G140600.9genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-11336383552
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                         +r+rr++kNRe+A rsR  K+a +++Le++v++L++ N+ L+ +  e+
  Potri.004G140600.9 336 RRQRRMIKNRESAARSRTLKQAHTQKLEDEVAKLKELNEVLQRKQAEI 383
                         79************************************9998765555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-6332398IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.933334383IPR004827Basic-leucine zipper domain
CDDcd147073.17E-20336383No hitNo description
SuperFamilySSF579591.25E-8336384No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-11336383No hitNo description
PfamPF001701.5E-9336386IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDSQWDYKNF GNAPPGQSSV TKPQENPFLI RQSSVYSLTF DEFQNTWGGG LRKDFGSMNM  60
EELLKNIWTA EETQAMTNTL GVGSEGSAPG GNLQRQGSLT LPRTLSQKTV DELWRDLIKE  120
TSGAAEDGSG SAGSNLPQRQ QTLGETTLEE FLVRAGVVRE DTQQIGRPDN SGFFGELSLL  180
NNNNDSSLAI GFQQPNGNNG LMGTWRMENN GNLVANQPPS LTLDAGGIRP TQQLPQSRQL  240
SQQQQLLFPK PAATVAFASP LHLSNNAQLA SPGVRRSVVG IADRSVNNGL AHSGGMGIVS  300
LATGGSNADT SSLSPVPYVF SRGRKASTAL EKVAERRQRR MIKNRESAAR SRTLKQAHTQ  360
KLEDEVAKLK ELNEVLQRKQ AEIIEMQQNQ FFETKKAQWG GKRQCLRRTL TGPW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00038PBMTransfer from AT4G34000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G140600.9
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4059640.0EF405964.1 Populus trichocarpa abscisic acid responsive elements-binding protein 2 (ABF2-1) mRNA, complete cds.
GenBankEF4059650.0EF405965.1 Populus trichocarpa abscisic acid responsive elements-binding protein 2 (ABF2-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384406.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
RefseqXP_024455201.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
RefseqXP_024455202.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
RefseqXP_024455203.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
RefseqXP_024455204.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
SwissprotQ9M7Q21e-105AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLA3FM740.0A3FM74_POPTR; Abscisic acid responsive elements-binding protein 2
STRINGPOPTR_0004s14790.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.11e-104ABRE binding factor 4
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  3. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]