PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G141800.1
Common NamePOPTR_0004s14900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 477aa    MW: 54100 Da    PI: 5.4426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G141800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-18112200197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l + s+f 
  Potri.004G141800.1 112 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLHEGDVLVFHLLKPSRF- 195
                         89*********************9994.33.5679***************4444....55***********************9988888. PP

                         .EEEEE CS
                  B3  92 lvvkvf 97 
                          +v ++
  Potri.004G141800.1 196 -KVYIV 200
                         .66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-22106203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-24108202IPR015300DNA-binding pseudobarrel domain
CDDcd100176.97E-26110201No hitNo description
PROSITE profilePS5086313.972112203IPR003340B3 DNA binding domain
PfamPF023621.2E-16112200IPR003340B3 DNA binding domain
SMARTSM010191.2E-19112203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDAKEDQNTS PKPRLPISDP VPLNTYPRIR RRKPNMSKLK LTQIHEKSPE PEYKTGHELV  60
LYDKSEESRE PRSRKRKKDA FSVFYDSTET KSPAMELAEE IRANLEAAYP SFAKTLVRSN  120
VTVGFWMHLP MRFCKMHLPK NDTTVFLENE SGEEYILNYI AERTALSGGW KAFCAANNLH  180
EGDVLVFHLL KPSRFKVYIV KGNGSSQADG EFGIPSSDAY GKEIISKPDE KDVQGGKKAK  240
HLELLPAGHL EENNQENGLI VVDNNKGYAA SQSENESEDR ASETLGVIKL SGSTVDFDNF  300
EGIENFSVLL NGFAIDSELS EHHRIKYYEL CRSQNSFLHS NLLNSINHKL AAEIIIGTVD  360
ISEEIRSSRL SSSHADYGVW DKTLKGFEMF GMNVGFLRER LSRLMSLALE SEEAMESECR  420
EVKLEQARID SEMKSLELRL LKLKETRERL DDEIEALKEN AEKHELMFQE AVSAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377RKRKK
27378RKRKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G141800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295033e-50CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384419.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLB9N4X40.0B9N4X4_POPTR; B3 family protein
STRINGPOPTR_0004s14900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-31B3 family protein