PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G147000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 398aa    MW: 45120.6 Da    PI: 9.3542
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G147000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-1325111698
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         + ++ l+ + l +pkkf++++g +   s   tl+ + gr   v+l  +k  g+ ++ kGW eFv+   +++g f+vF ++g+s+f  +v++
  Potri.004G147000.1  25 MVASILQDKKLKIPKKFVNKYGDE--LSSVATLTVPCGRICLVEL--QKVNGKLWFHKGWHEFVECYSIRVGYFLVFIYEGKSNF--NVHM 109
                         4455566677***********865..7779***************..999999***************************99999..8888 PP

                         E- CS
                  B3  97 fr 98 
                         f+
  Potri.004G147000.1 110 FD 111
                         76 PP
2B362.66.6e-20291384198
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         f  +l ps+v +  +l +p +fa+++ + + ++   +tl+ ++g++W v++  + k+g+  l++GW eFv +n+L+egD+++F+l++ +e 
  Potri.004G147000.1 291 FRVILRPSYVYRGFLLHIPSSFARTFlNTV-TG--FVTLQVSDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIHAKEI 376
                         667899*****************9994333.33..599999**********..66666677*************************99999 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                          l+v vfr
  Potri.004G147000.1 377 VLKVAVFR 384
                         89999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-2216112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-2117111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-1620111No hitNo description
PROSITE profilePS5086310.820113IPR003340B3 DNA binding domain
SMARTSM010196.6E-1021113IPR003340B3 DNA binding domain
PfamPF023625.2E-1024111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-26283384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-25284384IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-23289384No hitNo description
PROSITE profilePS5086315.185291386IPR003340B3 DNA binding domain
PfamPF023622.0E-18291384IPR003340B3 DNA binding domain
SMARTSM010191.5E-18291386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSQAAVKPDG SDSPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SVATLTVPCG  60
RICLVELQKV NGKLWFHKGW HEFVECYSIR VGYFLVFIYE GKSNFNVHMF DLTVSEIKNP  120
CNSLSQLQES SHDNPCLLPN EKDDGLEKVL GFRPPSPNLL SSITSKNCNE YIHCNWIQST  180
STASLEKPHV RTDVYNMREN FQSSRDIGTQ FNGMELTSTE DGAGSVIPGI TRKTRGRKRM  240
SENSIQNVKL KSTHVRNTSE TLTRRRRAVT PEEKERTIRA AHMFRSDNPF FRVILRPSYV  300
YRGFLLHIPS SFARTFLNTV TGFVTLQVSD GKQWPVRCSF KDGKAKLGQG WTEFVWENNL  360
EEGDVCIFEL IHAKEIVLKV AVFRVLEDAA PTGQLSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-4726038718144B3 domain-containing transcription factor VRN1
4i1k_B4e-4726038718144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G147000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454808.10.0B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A2K2AUS20.0A0A2K2AUS2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-84B3 family protein