PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G147200.1
Common NamePOPTR_0004s15430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 408aa    MW: 46110.6 Da    PI: 9.5741
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G147200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-1423114199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk+  + ++lk + l++p+kfa+++g+  e s   ++  ++g sW++ l  +k+ +++ + +GW +F +++ +  g  +vF + g s+f 
  Potri.004G147200.1  23 FFKII-TQSTLKDKKLRIPNKFARKFGE--ELSDVAKVVLPNGHSWQIGL--TKSNNSVSFDDGWLQFLEQHSVGYGHLLVFGYRGCSNF- 107
                         77877.556666667***********94..588899999***********..999999*************************9775666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +  +f+k
  Potri.004G147200.1 108 -NALIFDK 114
                         .7777776 PP
2B3634.7e-203143991199
                         HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +++ + +p +f ++h +g++     ++l+ ++gr+W ++l  +k++++ +++++GW+eF ++n+LkegD++vF+l+++++f+l v++fr+
  Potri.004G147200.1 314 YNKCFVAVPAEFSKRHlSGVS---EHIKLQVSDGRQWPLRL--NKTQRArMIISRGWNEFKRENNLKEGDVCVFELIKNKKFSLQVSMFRA 399
                         5678899*********86663...359**************..766666699************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-2117117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2017117IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-1621113No hitNo description
PROSITE profilePS5086312.26622115IPR003340B3 DNA binding domain
PfamPF023628.7E-1223114IPR003340B3 DNA binding domain
SMARTSM010193.6E-1223115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-24299394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-22300394IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.157304400IPR003340B3 DNA binding domain
CDDcd100171.15E-19305398No hitNo description
SMARTSM010194.4E-19307400IPR003340B3 DNA binding domain
PfamPF023621.9E-18313399IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAPRKEVRPT RSLQADQRPL WHFFKIITQS TLKDKKLRIP NKFARKFGEE LSDVAKVVLP  60
NGHSWQIGLT KSNNSVSFDD GWLQFLEQHS VGYGHLLVFG YRGCSNFNAL IFDKTACEIP  120
YHRCRGGTSG GKINYDEKCS PYDVDVMKDE GTIASIDSQY CCALESGVFD EDAGDSRQRH  180
PSKPPPSENN AQERPCFECS GDKRGKIPVK KELIVMAELD DTDESKRRKL SKKCRLPRPH  240
GSLIDETKVN KGKSKTKFAP SYADETDFSP RCGEDTDIIV CGFAKASEES KKAIHAARMF  300
RPKNPSFMVL LRSYNKCFVA VPAEFSKRHL SGVSEHIKLQ VSDGRQWPLR LNKTQRARMI  360
ISRGWNEFKR ENNLKEGDVC VFELIKNKKF SLQVSMFRAV DGSGPSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-2828739929142B3 domain-containing transcription factor VRN1
4i1k_B4e-2828739929142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G147200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455012.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A2K2AUV80.0A0A2K2AUV8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-29related to vernalization1 1