PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G156000.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 429aa    MW: 47285.8 Da    PI: 7.4693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G156000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09236283455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +    Ka +L + ++Y++sLq
  Potri.004G156000.3 236 SHSLAERVRREKISERMKYLQDLVPGC----NNITGKAGMLDEIINYVQSLQ 283
                         8**************************....89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.70E-10230287No hitNo description
SuperFamilySSF474598.11E-17230301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17232299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6236283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MINKALLSAG GENMLHCTDM TVLDRQRARI KWQQEQQQHQ VQLPQQEISY FSELSRVFQQ  60
AGFHEGGLSE VVTRSVKPDP GFVDNRWHND HVVGFGVGPP YTNGLGFELN YGAISRTSSC  120
PPAVAAAATA TATVRGAESV VSDKISSGVG RESSKKRKFD KDSRDKRIKG RAEEGESNTS  180
EKNNNKSSSS NNNSNKNNNS NKDNSAETSK DNSKVTEVQK PDYIHVRARR GQATDSHSLA  240
ERVRREKISE RMKYLQDLVP GCNNITGKAG MLDEIINYVQ SLQRQVEFLS MKLAAVNPRL  300
DFNIDNLFAK EAFPACSTNF PAIGMSPDMT NAAYLQFNPA QQQLVSCCGL DMGINPPDMG  360
LRRTTSTPVS IPETFLDSSC FTQIQAPPTW DADLPNLYNV AFDQGRQTTF PVQPFSGSVE  420
ASNLKMEM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.98060.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G156000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1466661e-132EF146666.1 Populus trichocarpa clone WS01211_J16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454467.10.0transcription factor bHLH63
TrEMBLA0A2K2AV700.0A0A2K2AV70_POPTR; BHLH family protein
STRINGPOPTR_0004s16330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-64cryptochrome-interacting basic-helix-loop-helix 1