PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G159300.2
Common NamePOPTR_0004s16660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 606aa    MW: 66237.5 Da    PI: 6.8238
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G159300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-094004371954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Potri.004G159300.2 400 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 437
                         664459******************************88 PP
2BELL129.79.6e-42262333172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ g+g+akpYt+lAl++iSrhFrcL+dai++qi
  Potri.004G159300.2 262 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVISGCGAAKPYTALALQTISRHFRCLRDAITGQI 333
                         79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-66203331IPR006563POX domain
PfamPF075264.7E-50209330IPR006563POX domain
PROSITE profilePS5007112.163378441IPR001356Homeobox domain
CDDcd000863.64E-13381442No hitNo description
SMARTSM003891.0E-9381445IPR001356Homeobox domain
SuperFamilySSF466892.22E-17382448IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-29384447IPR009057Homeodomain-like
PfamPF059204.0E-18398437IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MATYYTSSNN QRDGAAMVYL PGSYPEAPVL PGNMMMYMNS GSYSDNLAGN SHQQNNCIEF  60
QSVENSDSTP QQQEILSNLG GSRIGEHGFG AWRDGRNEML VMHSVSGASS VLHGAQSLQG  120
QGLSLSLGTQ IQSGIQMPSI SYRNTNPGLT SFLSPNSSIT GDGGGRNGSS RDDQSRNIDY  180
LTPGFSGGNH DMNKGDLSPY GMNSIARTIP NSKYLKAAQQ LLDEVVNVRK AIKQPDKEKN  240
QTTSEHGLNK STNSPSELSH AERQELQNKL TKLLSMLDEV DRRYKQYYHQ MQIVVSSFDV  300
ISGCGAAKPY TALALQTISR HFRCLRDAIT GQIHATRKSL GEQETSENSK GVGITRLRYV  360
DQHLRQQRAL HQLGMMQQHA WRPQRGLPES SVSILRAWLF EHFLHPYPKD SDKIMLARQT  420
GLTRSQVSNW FINARVRLWK PMVEEMYKEE LGDAEMDSNS SSENAAKATK GEEFQQSASS  480
TATERCSAGQ PSMDDCGLFS DAMAHSEGGG DRFMAAAAAA YQMSEVGRFG NGSGVSLTLG  540
LQHCEGGNLP MPGTTHHGFV SMRGDDDIYN AASSVGAGAT DFECLNPGNR QHRFSSSHVF  600
HDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17387444158Homeobox protein Meis1
4xrs_B6e-17387444158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G159300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2322863e-91CU232286.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454646.10.0BEL1-like homeodomain protein 6
SwissprotO656851e-166BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA0A2K2AVE80.0A0A2K2AVE8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16660.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-150BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]