PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G162600.2
Common NamePOPTR_0004s16950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 204aa    MW: 22668.5 Da    PI: 6.1492
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G162600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.2e-08333434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        + C+ +e+  ++lfC  ++  lC++C ++ H
  Potri.004G162600.2  3 MLCDVCESAAAILFCAADEAALCRSCDEKVH 33
                        78**************************998 PP
2zf-B_box25.62.5e-085291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + + C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Potri.004G162600.2 52 DVPQCDICEKAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                        5689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.253147IPR000315B-box-type zinc finger
PfamPF006435.1E-6341IPR000315B-box-type zinc finger
CDDcd000211.67E-6445No hitNo description
SMARTSM003367.9E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501198.7315196IPR000315B-box-type zinc finger
PfamPF006431.1E-55385IPR000315B-box-type zinc finger
CDDcd000213.10E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRMLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPQCDICE  60
KAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGC TEEQGQQPLD  120
DNETRRDQNQ PPKLTARENQ QNHRASPVPM VENNTDSDGK MDNKLIDLNA RPQRVHGKNP  180
TNQENHESSS LAPFGFFKGE PQK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.49570.0stem
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G162600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1457661e-172EF145766.1 Populus trichocarpa clone WS0113_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306138.11e-151B-box zinc finger protein 19 isoform X1
RefseqXP_024454836.11e-151B-box zinc finger protein 19 isoform X1
RefseqXP_024454837.11e-151B-box zinc finger protein 19 isoform X1
SwissprotC0SVM51e-83BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB9H0Y01e-149B9H0Y0_POPTR; DBB family protein
STRINGPOPTR_0004s16950.11e-150(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-86DBB family protein