PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G163800.1
Common NamePOPTR_0004s17080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 608aa    MW: 66337.2 Da    PI: 7.3526
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G163800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.7e-10430487562
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                         kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l+++
  Potri.004G163800.1 430 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 487
                         9********************************************9998877666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-17426490IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737428491IPR004827Basic-leucine zipper domain
PfamPF001709.1E-9430484IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.52E-11430481No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-10430486No hitNo description
CDDcd147032.05E-24431480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MGDTEEANSE MIQRLQSSFG TTQSSSTTMA KQPFSLINQI DVSQLSLNPT QMRARHFTNF  60
SQNFSGDSNK RVGFPPSHPN QIPPISPYSQ IPVSRPVNQQ MGPQSFSLGP THSRSLSQPS  120
SFFSLDSLPP LSPAPFRDSS SPSVSDPIST DVFMEEKDGG SHSLLPPSPF NRGNAPRVVE  180
SLPPRKAHRR SNSDIPFGLA NVLQCSPPLI PSRGSSGLER SMSGRENLGM AKPAQSVKKE  240
WERGGDSNAE GMGERKSEGE VVDDLFSAYM NLDNIDVLNS SGTDDKNGNE NREDLDSRAS  300
GTKTNGGDSS DNEAESSVNE SGGNLPRAGL SSSTEKREGI KRSAGGDIAP TTRHYRSVSM  360
DSFMGKLNFG NESPKLPPSP GTRPGQLSPT DSIDGNAFSL DFGNGEFSGA ELKKIMANEK  420
LAEIALADPK RAKRILANRQ SAARSKERKM RYISELEHKV QTLQTEATTL SAQLTLLQRD  480
SVGLTNQNNE LKFRIQAMEQ QAQLRDALNE ALTAEVRRLK IATAEQGGDS DPSKSMVQQQ  540
LSINPQMYLQ QPRPSQLGMH QLQQQSSASQ FNMHQRQRQQ QQQQQQQSSQ PQPQQNGNTT  600
PKPDSNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G163800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305468.30.0transcription factor RF2a
TrEMBLA0A2K2AVN70.0A0A2K2AVN7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s17080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-145bZIP family protein