PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G163800.2
Common NamePOPTR_0004s17080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 482aa    MW: 51934.5 Da    PI: 6.6511
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G163800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10430477552
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                         kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l
  Potri.004G163800.2 430 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 477
                         9****************************************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-7426480IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.094428481IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11430478No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-10430478No hitNo description
PfamPF001701.4E-9430477IPR004827Basic-leucine zipper domain
CDDcd147031.50E-24431478No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MGDTEEANSE MIQRLQSSFG TTQSSSTTMA KQPFSLINQI DVSQLSLNPT QMRARHFTNF  60
SQNFSGDSNK RVGFPPSHPN QIPPISPYSQ IPVSRPVNQQ MGPQSFSLGP THSRSLSQPS  120
SFFSLDSLPP LSPAPFRDSS SPSVSDPIST DVFMEEKDGG SHSLLPPSPF NRGNAPRVVE  180
SLPPRKAHRR SNSDIPFGLA NVLQCSPPLI PSRGSSGLER SMSGRENLGM AKPAQSVKKE  240
WERGGDSNAE GMGERKSEGE VVDDLFSAYM NLDNIDVLNS SGTDDKNGNE NREDLDSRAS  300
GTKTNGGDSS DNEAESSVNE SGGNLPRAGL SSSTEKREGI KRSAGGDIAP TTRHYRSVSM  360
DSFMGKLNFG NESPKLPPSP GTRPGQLSPT DSIDGNAFSL DFGNGEFSGA ELKKIMANEK  420
LAEIALADPK RAKRILANRQ SAARSKERKM RYISELEHKV QTLQTEATTL SAQLTLLQVA  480
M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G163800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305468.30.0transcription factor RF2a
TrEMBLA0A2K2AVN70.0A0A2K2AVN7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s17080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-117bZIP family protein