PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G181900.2

Common Name

POPTR_0004s18860g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 259aa MW: 29977.5 Da PI: 8.9374

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G181900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.4	4.4e-47	11	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+++yLk+ v g+k++l +vi ++iy+++P++Lp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++ Potri.004G181900.2 11 PGFRFHPTEEELLDFYLKNMVFGRKMRL-DVIGYLNIYRHDPSELPGLSKVGEREWYFFVPRDRKHGNGGRPNRTTQNGFWKATGSDRKIV 100 9************************9.99***********8778899*********************************9 PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++ +g +ktLvfykgrap+g+ktdWvm+eyrl Potri.004G181900.2 101 SLsdPKRMIGFRKTLVFYKGRAPRGSKTDWVMNEYRL 137 97666778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.535	9	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.24E-55	10	156	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDEMPLQLDL PGFRFHPTEE ELLDFYLKNM VFGRKMRLDV IGYLNIYRHD PSELPGLSKV 60 GEREWYFFVP RDRKHGNGGR PNRTTQNGFW KATGSDRKIV SLSDPKRMIG FRKTLVFYKG 120 RAPRGSKTDW VMNEYRLPEY SSPLPKDIVL CKIYRKATSL KVLEQRAAME EEMKTIHASP 180 SSSSLDTMSF CSQPEDPVPP ELPTQHLVFK KEIEDDIIRY EKPREIKGPS LQLPMGTDKL 240 PELQVPSKLS MEWNQDPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-45	7	161	17	173	NAC domain-containing protein 19
3swm_B	1e-45	7	161	17	173	NAC domain-containing protein 19
3swm_C	1e-45	7	161	17	173	NAC domain-containing protein 19
3swm_D	1e-45	7	161	17	173	NAC domain-containing protein 19
3swp_A	1e-45	7	161	17	173	NAC domain-containing protein 19
3swp_B	1e-45	7	161	17	173	NAC domain-containing protein 19
3swp_C	1e-45	7	161	17	173	NAC domain-containing protein 19
3swp_D	1e-45	7	161	17	173	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.1484	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G181900.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU224883	0.0	CU224883.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305547.1	0.0	NAC domain-containing protein 22
Swissprot	Q10S65	1e-90	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A3N7EU84	0.0	A0A3N7EU84_POPTR; Uncharacterized protein
STRING	POPTR_0004s18860.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-107	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Potri.004G181900.2
Entrez Gene	7470434

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]