PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G187000.1
Common NamePOPTR_0004s19820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 220aa    MW: 24689.2 Da    PI: 8.8244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G187000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-1759110156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr +   ++Wv+e+r+p   +k+ r++lg+f ++e+Aa+a++ a+++l+ge
  Potri.004G187000.1  59 PVYRGVRKRN-GNKWVCEVREP---NKKSRIWLGTFTSPEMAARAHDVAALALKGE 110
                         68*****887.9******9998...347*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1259110IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2060119IPR016177DNA-binding domain
SMARTSM003801.3E-2660123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2960119IPR001471AP2/ERF domain
PROSITE profilePS5103221.37760117IPR001471AP2/ERF domain
CDDcd000181.00E-2861119No hitNo description
PRINTSPR003672.5E-76172IPR001471AP2/ERF domain
PRINTSPR003672.5E-78399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEFENHSPSI SSLRQNLSCK PCNNPINYIY NLKQAQERPV TVLKKKKAGR KKFKETRHPV  60
YRGVRKRNGN KWVCEVREPN KKSRIWLGTF TSPEMAARAH DVAALALKGE TATLNFPDSA  120
LILPRAKSSS AGDIRRAARD AALNDDPFSM VMMSCPNNCS EKVSHQPNAL FFDEEALFNM  180
PGLLDSMAEG LILTPPVMQR GFNWDDMACS TDLTLWEED*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G187000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1514590.0EF151459.1 Populus trichocarpa C-repeat binding facor 5 (CBF5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455149.12e-88dehydration-responsive element-binding protein 1B
SwissprotA2WZI42e-55DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-55DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA9PL464e-87A9PL46_POPTR; C-repeat binding facor 5
STRINGPOPTR_0004s19820.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-35C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]