PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G188800.1

Common Name

POPTR_0004s20020g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 280aa MW: 30160.9 Da PI: 4.4555

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G188800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	253	276	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C +sF + Lk+H + H Potri.004G188800.1 253 FSCKSCERSFGSDGALKSHSQAkH 276 89*****************76655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.512	253	279	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	255	276	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSSMEFWGVE VKAGEPLKVE PKDFYMIHLS QAALGESSKK GNESVPLFLK LDEKKLVLGT 60 LSPDKIPQLS FDLVFEREFE LSHNWKNGSV FFCGYQAAIP ENDSDFSDDG DEIPFEKVEN 120 VKFATGTDKA AKPEKPKANP VVPSKDDESD DDDSDDDSDE DDSGDGSEGM SLEEDLDDES 180 DSEDEETPKK AEQSKKRTSD SAIKTPVSSK KAKTATPQKT DGGKAGQVTP HPAKGKAASN 240 GNNPKTPKSG GNFSCKSCER SFGSDGALKS HSQAKHGDK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.16645	0.0	bud\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G188800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144681	0.0	EF144681.1 Populus trichocarpa clone WS01116_O05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006384671.1	0.0	histone deacetylase HDT1
TrEMBL	A9P950	0.0	A9P950_POPTR; C2H2 family protein
STRING	POPTR_0004s20020.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67
Representative plant	OGRP1053	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	5e-35	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Potri.004G188800.1
Entrez Gene	18097993

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]