PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G203400.2

Common Name

POPTR_0004s21360g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 494aa MW: 55064.8 Da PI: 8.3485

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G203400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.2	7.3e-08	187	230	4	45
XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka ++++Le+ +L++ ++L Potri.004G203400.2 187 AKTLRRLAQNREAARKSRLRKKAraYVQQLETSRIKLSQLEQDL 230 6889*****************96337899999877777776666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-4	181	233	No hit	No description
PROSITE pattern	PS00036	0	191	206	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-31	271	346	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MASHRVGETG LSSVPSNHHL PYAPVHGINT PSANFINQEG SAFDFGELEE AIVLQGVQIR 60 NDEAKARRRA ATLEMFPSWP IRFQQTPRGS SKSGGESTDS GSATNTLSSK ADAHLEPESP 120 ISKKASSSDH YNQAFDQKHL QFQDQQQVDM ANDTSRTGGR PSQQNQSPAK TPHEKRKVST 180 SEKPLDAKTL RRLAQNREAA RKSRLRKKAR AYVQQLETSR IKLSQLEQDL QRARQQGLFL 240 GGCGGAGGNI SSGPAIFDME YARWLEDDHR HMSELRTGLH SHLSDGELRV IVDGYISHYD 300 EIFRLKVEAA KSDVFHLITG MWSTPAERCF LWMGGFRPSE LIKMLISQLD PLTEQQIMGI 360 YNLQQSSQQA EEALSQGLEQ LQQSLVDTIA GGPVIGGMQQ MAVALGKLAN LEGFVRQADN 420 LRQQTLHQLR RILTVRQVAR CFLVIGEYYG RLRALSSLWA SRPRETMMSE DNSCQTTTDL 480 QMVHPSQNHF ANF*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MASHRVGETG LSSVPSNHHL PYAPVHGINT PSANFINQEG SAFDFGELEE AIVLQGVQIR  60
NDEAKARRRA ATLEMFPSWP IRFQQTPRGS SKSGGESTDS GSATNTLSSK ADAHLEPESP  120
ISKKASSSDH YNQAFDQKHL QFQDQQQVDM ANDTSRTGGR PSQQNQSPAK TPHEKRKVST  180
SEKPLDAKTL RRLAQNREAA RKSRLRKKAR AYVQQLETSR IKLSQLEQDL QRARQQGLFL  240
GGCGGAGGNI SSGPAIFDME YARWLEDDHR HMSELRTGLH SHLSDGELRV IVDGYISHYD  300
EIFRLKVEAA KSDVFHLITG MWSTPAERCF LWMGGFRPSE LIKMLISQLD PLTEQQIMGI  360
YNLQQSSQQA EEALSQGLEQ LQQSLVDTIA GGPVIGGMQQ MAVALGKLAN LEGFVRQADN  420
LRQQTLHQLR RILTVRQVAR CFLVIGEYYG RLRALSSLWA SRPRETMMSE DNSCQTTTDL  480
QMVHPSQNHF ANF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G203400.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455751.1	0.0	transcription factor TGA9 isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2K2AXH8	0.0	A0A2K2AXH8_POPTR; Uncharacterized protein
STRING	POPTR_0004s21360.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Potri.004G203400.2
Entrez Gene	18098126

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]