PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G208700.1
Common NamePOPTR_0004s21850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 421aa    MW: 46819.2 Da    PI: 8.2286
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G208700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.14.3e-101394191374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++ ssg+l++a+a+L ++s l+s  gd mqRlaa f+ ALa rl++ ++++ kal+  +++    ++   a  lf  ++P+l
  Potri.004G208700.1  39 LIQLLLKCAKHASSGNLHRADACLLEISVLSSILGDCMQRLAARFASALAIRLVKRWPGIHKALNQAQQP---KVDLDRAKLLFTRTFPYL 126
                         689*************************************************************999998...6667777888******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          f++ +  +++l a+++e+ +Hi+D++ +    W+aLl+ +a+ p+gpp+l+iT v+     sk  le++g+rL k Ae++gvpf+fn  +
  Potri.004G208700.1 127 SFAYAIIAKTLLHAMANERVIHIVDLGSGDSNLWVALLRGFANSPHGPPHLKITCVNG----SKAILEKLGQRLVKEAESVGVPFQFNS-I 212
                         **********************************************************....9**************************.6 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                           +l +l+ ++++  +gEala  ++l+lh ll              ++  +  +++ ++L +++s+sP+++ vveqeadhn +++++rf+e
  Potri.004G208700.1 213 NASLRELTKDMFKAGSGEALAFVSILNLHVLLseddqvvahfgvnkNDGIKDCKQIGDFLAMIRSMSPTLLFVVEQEADHNLNRLVDRFVE 303
                         999*****************************************88666666678999********************************* PP

                GRAS 260 aleyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                          l+yysa+fds++a+l+++   +er ++E++ +grei+n+vaceg er+erhe++++W  rl +aGFkpv++ ++  ++ak ++  ++++g
  Potri.004G208700.1 304 GLNYYSAVFDSIDATLASNLasDERLVLEEM-FGREIENIVACEGLERIERHERYARWVVRLAQAGFKPVRFWHSSGEDAKQIMDAFGKNG 393
                         ***************9987555999999999.*********************************************************** PP

                GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                         y+   e+  l+++W++rpL++++aW+
  Potri.004G208700.1 394 YKTVIERTGLMICWRERPLYALTAWT 419
                         *************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.46213399IPR005202Transcription factor GRAS
PfamPF035141.5E-9839419IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSSMTPLLKP DVTLSLTLSP SSPSPHDQTL KPEERGIRLI QLLLKCAKHA SSGNLHRADA  60
CLLEISVLSS ILGDCMQRLA ARFASALAIR LVKRWPGIHK ALNQAQQPKV DLDRAKLLFT  120
RTFPYLSFAY AIIAKTLLHA MANERVIHIV DLGSGDSNLW VALLRGFANS PHGPPHLKIT  180
CVNGSKAILE KLGQRLVKEA ESVGVPFQFN SINASLRELT KDMFKAGSGE ALAFVSILNL  240
HVLLSEDDQV VAHFGVNKND GIKDCKQIGD FLAMIRSMSP TLLFVVEQEA DHNLNRLVDR  300
FVEGLNYYSA VFDSIDATLA SNLASDERLV LEEMFGREIE NIVACEGLER IERHERYARW  360
VVRLAQAGFK PVRFWHSSGE DAKQIMDAFG KNGYKTVIER TGLMICWRER PLYALTAWTC  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-45234192378Protein SCARECROW
5b3h_D3e-45234192378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G208700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454953.10.0scarecrow-like protein 3
TrEMBLA0A2K2AXT20.0A0A2K2AXT2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s21850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF158131011
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-100scarecrow-like 3