PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G219100.1
Common NamePOPTR_0004s22880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 381aa    MW: 42579.1 Da    PI: 8.7894
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G219100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1201.5e-062522981763
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         A+rsR RK+++i+ Le+ v++L+a+ ++   ele  +++   l +e+
  Potri.004G219100.1 252 AQRSRVRKLQYIADLERNVQALQAKGSEVSAELEFVNQQNLILSMEN 298
                         89**************************9999999888887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-4237311No hitNo description
SMARTSM003380.0056241300IPR004827Basic-leucine zipper domain
CDDcd147032.18E-14243291No hitNo description
SuperFamilySSF579594.92E-5252294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MSCFQGTAIA LSMANSKGSA NIRNFMYSGK HALLPPKSPF PIVSPSYVDY VPSSSIGSKT  60
VQKPREGNTH HQRTSSEMLF IEDQPSWLDD LLNEPETPVR RGGHRRSSSD SFAYIDAANA  120
SNMDYAAQDG CRYKNVISIP SWGSQDFDYY KDVRRTPLYA EMNMSKQKNR AWDSSLNAQT  180
YPSSLSSPRE NAGLQSSGSS CAPREADSVS ESEKQDPLDG SHDSKISSEK DSSNSKSSAS  240
ETDTKRAKQQ FAQRSRVRKL QYIADLERNV QALQAKGSEV SAELEFVNQQ NLILSMENKA  300
LKQRFENLAH EQLIKCLEHE VLEREIGRLR ALYQQQQQQQ PASNHRRSKS KDLDSQFANL  360
SLKHKDANSS RDPVTGSLRI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G219100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166890.0AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384994.10.0uncharacterized protein At4g06598
SwissprotQ8W3M76e-73Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A2K2AYE70.0A0A2K2AYE7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51232637
Representative plantOGRP42521219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-101bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]