PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G219100.2
Common NamePOPTR_0004s22880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 369aa    MW: 41369.6 Da    PI: 8.4216
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G219100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.23.2e-072402861763
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         A+rsR RK+++i+ Le+ v++L+ae ++   ele  +++   l +e+
  Potri.004G219100.2 240 AQRSRVRKLQYIADLERNVQALQAEGSEVSAELEFVNQQNLILSMEN 286
                         89******************************999988887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-4225299No hitNo description
SMARTSM003380.0024229288IPR004827Basic-leucine zipper domain
CDDcd147039.98E-15231279No hitNo description
SuperFamilySSF579591.75E-5240282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MANSKGSANI RNFMYSGKHA LLPPKSPFPI VSPSYVDYVP SSSIGSKTVQ KPREGNTHHQ  60
RTSSEMLFIE DQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDAANASN MDYAAQDGCR  120
YKNVISIPSW GSQDFDYYKD VRRTPLYAEM NMSKQKNRAW DSSLNAQTYP SSLSSPRENA  180
GLQSSGSSCA PREADSVSES EKQDPLDGSH DSKISSEKDS SNSKSSASET DTKRAKQQFA  240
QRSRVRKLQY IADLERNVQA LQAEGSEVSA ELEFVNQQNL ILSMENKALK QRFENLAHEQ  300
LIKCLEHEVL EREIGRLRAL YQQQQQQQPA SNHRRSKSKD LDSQFANLSL KHKDANSSRD  360
PVTGSLRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G219100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166890.0AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384994.10.0uncharacterized protein At4g06598
SwissprotQ8W3M75e-73Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A2K2AYE70.0A0A2K2AYE7_POPTR; Uncharacterized protein
TrEMBLU5GKB60.0U5GKB6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22880.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-102bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]