PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G219600.1
Common NamePOPTR_0004s22930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 111aa    MW: 12562.3 Da    PI: 10.0068
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G219600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24e-15485185
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85
                        f k+l   ++  ++rl+lp ++++++ +++e    l+++de+g++W+++++++ ++++   l++ W +Fv+ +gL +gD++v+  d
  Potri.004G219600.1  4 FTKKL--DSTDVQRRLTLPENCLKDFPKDHEA--NLKFKDEEGQVWTFRCRVSPGRSSkPALSGDWFSFVRKKGLSTGDVIVIISD 85
                        66777..44444567********999777554..7***************88444444599*********************9744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.6012104IPR003340B3 DNA binding domain
SMARTSM010193.5E-74104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-17489IPR015300DNA-binding pseudobarrel domain
CDDcd100173.60E-174102No hitNo description
SuperFamilySSF1019367.59E-15489IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-12585IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MENFTKKLDS TDVQRRLTLP ENCLKDFPKD HEANLKFKDE EGQVWTFRCR VSPGRSSKPA  60
LSGDWFSFVR KKGLSTGDVI VIISDKEKDV AAGEHFKIKI KKSASTHHQN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.19251e-166bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G219600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166890.0AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002452.12e-43PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBLA0A2K2AYF11e-75A0A2K2AYF1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22930.12e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13561527