PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G219700.1
Common NamePOPTR_1461s00200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 126aa    MW: 14881.5 Da    PI: 10.948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G219700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.9e-137107196
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE..TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled..esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 
                         f k+l++ dv  ++r+++p k ++      +gk+ +    ++ d   +gr W+++++ rkk+     v+++GW ++v+ +gL+egD v F 
  Potri.004G219700.1   7 FTKILSQTDV--KHRMTIPMKSFNVVfqipQGKHYK--RFVFIDmiDTGRPWSFRCSTRKKDVYrkPVFSSGWIKYVRRKGLREGDQVSFF 93 
                         7888955555..5679*****996669888444333..34444444599*******87666544669***********************9 PP

                         E-SS.SEE..EEEE CS
                  B3  84 ldgr.sefelvvkv 96 
                         l+++  e+ l+++v
  Potri.004G219700.1  94 LVQKdGEEGLRFGV 107
                         99765666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.02E-15499IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-164109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.535111IPR003340B3 DNA binding domain
CDDcd100172.47E-146100No hitNo description
PfamPF023621.4E-97107IPR003340B3 DNA binding domain
SMARTSM010190.00177108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MYPRLIFTKI LSQTDVKHRM TIPMKSFNVV FQIPQGKHYK RFVFIDMIDT GRPWSFRCST  60
RKKDVYRKPV FSSGWIKYVR RKGLREGDQV SFFLVQKDGE EGLRFGVQAQ KKLIRLLGKD  120
CWDTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G219700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166890.0AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455931.12e-51uncharacterized protein LOC18098285
TrEMBLU7DT821e-86U7DT82_POPTR; Uncharacterized protein
STRINGPOPTR_1461s00200.12e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-06related to ABI3/VP1 1