PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G219800.1
Common NamePOPTR_0004s22940g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 126aa    MW: 14732 Da    PI: 9.5539
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G219800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-127104194
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85 
                         f k+l++ dv   +r+ +p   ++ +   +g++ ++++++ + ++g sW+++++ rkk+      vl++GW e+ ++++L+egD v F l+
  Potri.004G219800.1   7 FTKILSRTDVE--HRMAIPMGSFDVFqipQGEHSKQFDVIDMIKTGHSWSFRCSTRKKD-FypkPVLSSGWIEYIREKDLREGDQVSFFLV 94 
                         77888555555..679****99977788877767777777777**********655555.348899**********************998 PP

                         SS.SEE..EE CS
                  B3  86 gr.sefelvv 94 
                         ++  e+ l++
  Potri.004G219800.1  95 QKdGEEGLRL 104
                         6545555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-13497IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-144103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.4185110IPR003340B3 DNA binding domain
CDDcd100173.74E-16699No hitNo description
PfamPF023622.6E-97105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MYQRLIFTKI LSRTDVEHRM AIPMGSFDVF QIPQGEHSKQ FDVIDMIKTG HSWSFRCSTR  60
KKDFYPKPVL SSGWIEYIRE KDLREGDQVS FFLVQKDGEE GLRLGVQAQK KLIRLWGKDC  120
WTAPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G219800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166890.0AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455931.15e-72uncharacterized protein LOC18098285
TrEMBLB9PC878e-88B9PC87_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22940.11e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336