PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G219900.1
Common NamePOPTR_0004s22950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 125aa    MW: 14772.3 Da    PI: 10.9973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G219900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-127106196
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+l++ dv  ++r+++p + ++ +   +gk   sk  ++ d   +gr W+++++ rkk+     v+++GW ++v+ +gL+egD v F +
  Potri.004G219900.1   7 FTKILSRTDV--KHRMTIPMESFNVFqipQGK--HSKRFVFIDmiDTGRPWSFRCSTRKKDVYpkPVFSSGWIKYVRRKGLREGDQVSFFF 93 
                         7788855555..5679******9766887444..34456666655699*******77666665889***********************98 PP

                         -SS.SEE..EEEE CS
                  B3  85 dgr.sefelvvkv 96 
                         +++  e+ l+++v
  Potri.004G219900.1  94 VEKdGEEGLRFGV 106
                         7554655566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.55E-15498IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-154107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-15599No hitNo description
SMARTSM010190.0047107IPR003340B3 DNA binding domain
PROSITE profilePS508639.5167110IPR003340B3 DNA binding domain
PfamPF023624.6E-97106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MYRRPIFTKI LSRTDVKHRM TIPMESFNVF QIPQGKHSKR FVFIDMIDTG RPWSFRCSTR  60
KKDVYPKPVF SSGWIKYVRR KGLREGDQVS FFFVEKDGEE GLRFGVQAQK KLRLLGKDCW  120
TTPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G219900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166890.0AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455931.11e-54uncharacterized protein LOC18098285
TrEMBLA0A2K2AYF75e-86A0A2K2AYF7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22950.11e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336