PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.004G220000.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 110aa MW: 12518.7 Da PI: 10.1452

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.004G220000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.8	3.4e-12	6	86	3	86
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+l psdv ++ l lp +++++ g+ ++ l+++de+g +W++++++ ++ +r vl + W Fv+++ Lk+gD++v+ +++ Potri.004G220000.1 6 KKLNPSDVDRK--LHLPENCLKNLpRGQ---ETFLKIKDEDGIVWTFRCKIpPGGHSRPVLYGEWLLFVRQKCLKVGDIIVIVFNK 86 78888888887..9****96555444...456***********9976666679*******************998655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	8.628	2	108	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.3E-16	4	87	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0043	4	96	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.37E-14	5	85	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.86E-15	5	90	No hit	No description
Pfam	PF02362	8.7E-10	6	86	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MEEVTKKLNP SDVDRKLHLP ENCLKNLPRG QETFLKIKDE DGIVWTFRCK IPPGGHSRPV 60 LYGEWLLFVR QKCLKVGDII VIVFNKQKAR AAADTSGDLF EIKVKKTRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.004G220000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002452.1	2e-33	PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBL	A0A2K2AYG3	1e-74	A0A2K2AYG3_POPTR; Uncharacterized protein
STRING	POPTR_0003s00430.1	3e-39	(Populus trichocarpa)
STRING	POPTR_0003s00440.1	3e-39	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13561	5	27

Link Out ? help Back to Top
Phytozome	Potri.004G220000.1