PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G220100.1
Common NamePOPTR_0004s22960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 105aa    MW: 11843.6 Da    PI: 10.1074
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G220100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.8e-161851696
                        EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                  B3 16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96
                        +++p + ++++   +gk   sk+++  d++g +W++++++r+k+ +   vl++GW +Fvk  gLkegD v+F++ ++   + + +++
  Potri.004G220100.1  1 MTIPMDSLSAFqipEGK--YSKEVVAVDTDGHRWSFRCSMRRKDPHrkPVLSSGWIKFVKNRGLKEGDEVIFSVAHNdGAEGPQFGI 85
                        67888888888554434..5789***************9955544448*************************88775666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.661189IPR003340B3 DNA binding domain
CDDcd100171.85E-15170No hitNo description
PfamPF023622.8E-13185IPR003340B3 DNA binding domain
SuperFamilySSF1019362.49E-14276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-141576IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MTIPMDSLSA FQIPEGKYSK EVVAVDTDGH RWSFRCSMRR KDPHRKPVLS SGWIKFVKNR  60
GLKEGDEVIF SVAHNDGAEG PQFGIEARRK LTKLFGQDIW VNPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120521e-176bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G220100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2252471e-125CU225247.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028526.14e-58PREDICTED: uncharacterized protein LOC105128509
TrEMBLU5GKR77e-72U5GKR7_POPTR; B3 family protein
STRINGPOPTR_0004s22960.11e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35520.13e-07auxin response factor 15