PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G220800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 144aa    MW: 16719 Da    PI: 7.7923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G220800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-1332122189
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFk 83 
                         f k+l  s + +++rl++p   + ++   +g+    +++  +d+  r+W ++l++  +   +     v+t+ W +Fv+++gL++gD ++F+
  Potri.004G220800.1  32 FTKQL--SPTDTTHRLTIPAANLGDFefpMGE--HAIDIEATDTIERQWIFRLSIrrE--NNPnprPVFTGQWTQFVNEKGLRVGDRIIFS 116
                         88999..88888899*******9999987655..45689999***********88552..3333469************************ PP

                         E-SSSE CS
                  B3  84 ldgrse 89 
                         +++ ++
  Potri.004G220800.1 117 RQQVEG 122
                         776544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-1927122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-1430120IPR015300DNA-binding pseudobarrel domain
CDDcd100176.34E-1530117No hitNo description
PROSITE profilePS508639.02330133IPR003340B3 DNA binding domain
PfamPF023621.9E-932123IPR003340B3 DNA binding domain
SMARTSM010190.004932126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSQVLVSVRF LKTWAKASLI SPENQLEMEH LFTKQLSPTD TTHRLTIPAA NLGDFEFPMG  60
EHAIDIEATD TIERQWIFRL SIRRENNPNP RPVFTGQWTQ FVNEKGLRVG DRIIFSRQQV  120
EGNGVQYSIR AERRIFNYWV NVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G220800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.11e-76PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A2K2AYH51e-101A0A2K2AYH5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23010.11e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-08B3 family protein