PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G221600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 96aa    MW: 11167.6 Da    PI: 4.4301
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G221600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.6e-1115911385
                        TT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3 13 sgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld 85
                        + rl +p + + ++ +++ +++ + +e ++   ++W+++l++r+  +r    v+t+ W +Fv+++gLk+gD + ++++
  Potri.004G221600.1 15 EYRLAFPTSSLWAFPMPE-GETAVYFEATDTleNEWNFRLSIRGENDRytkPVITGDWLQFVRDKGLKVGDKLFLTRE 91
                        456888888888886654.44577777766666*******9977777756689*******************999943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-12492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-11691IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-15793No hitNo description
PROSITE profilePS508638.7414896IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEVLMEKKLS QTDIEYRLAF PTSSLWAFPM PEGETAVYFE ATDTLENEWN FRLSIRGEND  60
RYTKPVITGD WLQFVRDKGL KVGDKLFLTR EEGVNG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G221600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000152.11e-26PREDICTED: uncharacterized protein LOC105107804 isoform X1
TrEMBLA0A3N7G7532e-64A0A3N7G753_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23040.16e-37(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-06related to ABI3/VP1 2