PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G001800.1
Common NamePOPTR_0005s00360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 743aa    MW: 79784.4 Da    PI: 6.2408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G001800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.4e-16470516455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Potri.005G001800.1 470 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 516
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-17462520No hitNo description
SuperFamilySSF474591.57E-20463527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20463524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13470516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MPLSELLYRM AKGKIDFSQE KDPSCSTDLS FVRPENDFGE LIWENGQIQS SRARKIQPCS  60
TLPCQNPKIR YKDIGNGTDI RTGKFGMMES TLNELPMSVP AVEMGVNQDD DMVPWLNYPL  120
DESPQHDYCS EFLPELSGVT VNGHSSQSNF PSFGKKSFSQ SVRDSRTVSV HNGLSLEQGD  180
VAKNSSAGDT EANRPRTSAS QLYLSSSEHC QTSFPYFRSR VSAKNGDSTS NAAHHVVSVD  240
SIRAPTSGGG FPSIKMQKQV PAQSTTNSSL MNFSHFARPA ALAKANLQNI GMRAGTGISN  300
MERTQNKDKG SIASSSNPAE CTPINSCSGL LKETSSHCLP VLMPPKVDAK PSEAKPAEGF  360
VPAELPEATI PEGDSKSDRN CRQNFCESAI KGVADVEKTK EPVVASSSVG SDNSVERASD  420
DPTENLKRKH RDTEESEGPS EDVEEESVGA KKQAPARAGN GSKRNRAAEV HNLSERRRRD  480
RINEKMRALQ ELIPNCNKVD KASMLDEAIE YLKTLQLQVQ IMSMGAGLYM PSMMLPPGMP  540
HMHAAHMGQF LPMGVGMGMR MGMGMGFGMS MPDVNGGSSG CPMYQVPPMH GPHFSGQPMS  600
GLSALHRMGG SNLQMFGLSG QGFPMSFPCA PLVPMSGGPP LKTNMEPNAC GVVGATDNLD  660
SATACSSHEA IQKINSQVMQ NNVVNSSMNQ TSSQCQATNE CFEQPALVQN NAQDSGVADN  720
RALKSVGGND NVPSSEAGEH LQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474479ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G001800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382253.10.0transcription factor PIF3 isoform X1
TrEMBLU5G9H30.0U5G9H3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-74phytochrome interacting factor 3