PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G002400.1
Common NamePOPTR_0005s00420g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 260aa    MW: 28967.3 Da    PI: 10.3422
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G002400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.8e-181050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        +i n+s r+ tf kRr+g++KK +ELS+LC+++++ ii+s+
  Potri.005G002400.1 10 FIVNDSARKATFKKRRKGLMKKVSELSTLCGIDACAIIYSP 50
                        799*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.932149IPR002100Transcription factor, MADS-box
CDDcd002662.20E-34285No hitNo description
SuperFamilySSF554553.01E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTRKKVKLAF IVNDSARKAT FKKRRKGLMK KVSELSTLCG IDACAIIYSP YDSQPEVWPS  60
PLGVQRVLSK FKTMPEMEQS KKMVNQESFL RQRITKASEQ LRKQRKENRE KEVTQAMFQC  120
LTGKINLANL NMIDLNDLGW MIDRNLKDVE KRVETLNKRS RSSTGGTSHT SQLAAVAATG  180
AGPSNGGQQA PESSQKADVL ATTNLGVNVD SMLRQQWFMD MVTPQETAIL GFGGDDNMML  240
PFGDTNHNAL FSNPFFPLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIVNDSARKATFKKRR
22125KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G002400.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2145961e-130AC214596.1 Populus trichocarpa clone POP018-C13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382260.20.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-72AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF690.0U5GF69_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00420.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-73AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]