PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G020500.1
Common NamePOPTR_0005s02040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 162aa    MW: 17587.2 Da    PI: 10.4527
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G020500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.13.3e-202660135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Potri.005G020500.1 26 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRS 60
                        *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-142072IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-142366No hitNo description
Gene3DG3DSA:3.30.50.101.7E-162459IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.72E-132574No hitNo description
PfamPF003203.8E-182660IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4532656IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDLKGTKSSR EDESSGSGDI EGKKACTDCK TTKTPLWRGG PAGPKSLCNA CGIRYRKKRS  60
VMRLEKGPEK KREKTTTSNT TTATDISTIT TATTTNTAQV VSGNGLISES LRMSLMVLGE  120
EMMLQRPSVV KKQRCQRKRK LREEEQAAFS LMALSCGSVF A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G020500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382425.11e-114GATA transcription factor 16
TrEMBLB9N4N61e-112B9N4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s02040.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-16GATA transcription factor 15