PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G020500.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 128aa    MW: 14353.8 Da    PI: 10.6435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G020500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA245.5e-0812262135
                GATA 21 tLCnaCGlyyrkkgl 35
                        +LCnaCG++yrkk++
  Potri.005G020500.2 12 SLCNACGIRYRKKRS 26
                        5************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.9E-41225IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVFDLWVFFF QSLCNACGIR YRKKRSVMRL EKGPEKKREK TTTSNTTTAT DISTITTATT  60
TNTAQVVSGN GLISESLRMS LMVLGEEMML QRPSVVKKQR CQRKRKLREE EQAAFSLMAL  120
SCGSVFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G020500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382425.15e-78GATA transcription factor 16
TrEMBLB9N4N61e-76B9N4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s02040.12e-77(Populus trichocarpa)