PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G051100.2
Common NamePOPTR_0005s05270g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 746aa    MW: 81587.4 Da    PI: 5.6526
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G051100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR29.71.3e-094694961441
                 TCR  14 lkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k YCeCfaag +C e C+C +C+N+  
  Potri.005G051100.2 469 MKSYCECFAAGLYCIEPCSCLECSNNPA 496
                         599**********************975 PP
2TCR48.12.4e-15542580139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeCf+ g+ Cs+ C+Ce+CkN+
  Potri.005G051100.2 542 RHKRGCNCKKSSCLKKYCECFQGGVGCSSYCRCEGCKNT 580
                         589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.184460582IPR005172CRC domain
SMARTSM011140.0013468497IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-6469494IPR005172CRC domain
SMARTSM011141.2E-14542583IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.6E-12544580IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MELNTPNKNQ IPATNPLSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNFP SFASPLSVFA  60
SPQLSSQSDA RSFMRRDQFS EPSKPELLQS KDENDTSIGV FEAAQLTGLS VEQSECSTPA  120
NSSKGVITKL PGEHMELAIE EPDTLKYYCA SPDDNIIMVP LKAIIEPQMA GDPNERYCSR  180
KSEKDLRKIG QTGQNEDEAG CDWVALISDV ADILTLEPSI DEESAEKQKM VDPGTISFIS  240
NVLQAPQDNS DDSETSYYAG SSQQREIGEP GIQPVESGEQ NEAHQTPSVF SGTLPDKPIV  300
NDAAAKVDIR GKSYQSSSKQ HKIRRRCLVF EMGAHKKKLA FESSSSTSSQ SDHMGASIEK  360
HATPRTDKGK TLSALPGRGI GLHLNALTAT SSGNAVKIET LASGKQEISQ PPSPAAHMAS  420
GLDPVSKSLA LITVETDFVP FDNEDKVMEN VPQTSMVVTE DFVISSPKMK SYCECFAAGL  480
YCIEPCSCLE CSNNPAHEDT VLETRRQIES RNPLAFAPKV IRNSDSVSEF GEETNKTPAS  540
ARHKRGCNCK KSSCLKKYCE CFQGGVGCSS YCRCEGCKNT FGCKNGVEEN DLKWGESKIH  600
ENTSNLNLLD IIEKGEDHPD LMVPSKDSRS PVHPQIPISG QLSGSSLCDV GPSTKMRPIQ  660
RFRTNFFYHQ PKYEKHLQVI PEDETPEILN RNCLPTSGVK SVSPNSKRVS PPHHGFGPST  720
TWRRGRKLIL RSVSPSPSLN PPCEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1346957922120Protein lin-54 homolog
5fd3_B8e-1346957922120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G051100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456352.10.0protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBLA0A2K2ABV70.0A0A2K2ABV7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05270.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-89TESMIN/TSO1-like CXC 2