PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G051100.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CPP
Protein Properties Length: 454aa    MW: 50351.9 Da    PI: 7.9334
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G051100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR475.1e-15165204241
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         ++k+CnCk+skClk+YCeCfaag +C e C+C +C+N+  
  Potri.005G051100.3 165 SCKRCNCKRSKCLKLYCECFAAGLYCIEPCSCLECSNNPA 204
                         689**********************************975 PP
2TCR48.91.3e-15250288139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeCf+ g+ Cs+ C+Ce+CkN+
  Potri.005G051100.3 250 RHKRGCNCKKSSCLKKYCECFQGGVGCSSYCRCEGCKNT 288
                         589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-16164205IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.598165290IPR005172CRC domain
PfamPF036382.8E-11167202IPR005172CRC domain
SMARTSM011141.2E-14250291IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.5E-12252288IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MELNTPNKNQ IPATNPLSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNFP SFASPLSVFA  60
SPQLSSQSDA RSFMRRDQFS EPSKPELLQS KDENDTSIGV FEAAQLTGLS VEQSECSTPA  120
NSSKGVITKL PGEHMELTSM VVTEDFVISS PKMKRQKFEY LGASSCKRCN CKRSKCLKLY  180
CECFAAGLYC IEPCSCLECS NNPAHEDTVL ETRRQIESRN PLAFAPKVIR NSDSVSEFGE  240
ETNKTPASAR HKRGCNCKKS SCLKKYCECF QGGVGCSSYC RCEGCKNTFG CKNGVEENDL  300
KWGESKIHEN TSNLNLLDII EKGEDHPDLM VPSKDSRSPV HPQIPISGQL SGSSLCDVGP  360
STKMRPIQRF RTNFFYHQPK YEKHLQVIPE DETPEILNRN CLPTSGVKSV SPNSKRVSPP  420
HHGFGPSTTW RRGRKLILRS VSPSPSLNPP CEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1816928714120Protein lin-54 homolog
5fd3_B4e-1816928714120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G051100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175902e-82AC217590.1 Populus trichocarpa clone POP067-L23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456351.10.0protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_024456352.10.0protein tesmin/TSO1-like CXC 2 isoform X2
RefseqXP_024456353.10.0protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBLA0A2K2ABV70.0A0A2K2ABV7_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05270.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.16e-75Tesmin/TSO1-like CXC domain-containing protein