PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G053200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 435aa    MW: 47108.2 Da    PI: 8.6923
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G053200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.21.1e-15226280357
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         + kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L  eN++L k+l   ++++ 
  Potri.005G053200.1 226 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRVENSSLLKRLADTSQKYN 280
                         689***************************************9988877666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-19224288IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.404226281IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-11226279No hitNo description
PfamPF001702.6E-13227278IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.32E-11228277No hitNo description
PROSITE patternPS000360231246IPR004827Basic-leucine zipper domain
PfamPF124981.0E-45295421IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSHRPILVSS TGHKHQLSKM NRSESEWAFQ RFLQEASAAT FDDNTPNSSA DKTDVVHIND  60
YGYNNNNATS KSCDNNYKDN AMPLSNGACA TAASSSLGAP ADIPVESEDY HAFLKSKLNM  120
ACAAVALSRA YFVKPLKSPA TAESGSQASS TSHLGSHAPS KGAGHDLSRS RDKDANEPLG  180
TPSLPSMQKK LAVSGKPTTS GSSRELSEDD ENEAETEITE NMHPADAKRV RRMLSNRESA  240
RRSRRRKQAH LTELETQVAQ LRVENSSLLK RLADTSQKYN ESAVDNRVLK ADIETLRAKV  300
RMAEETVKRF TGLNHMFHAM PYISAMSMPS FDGCPSDTSA DAAVPVKDDP KHHFYQAPNN  360
PISTHDSRPR VNFVLADISS VENVQPNSGT AAGVSGNKLG RTASLQRVAS LERLQKRIRG  420
VASPCGPQSN GEQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240247RRSRRRKQ
2242247SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G053200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482940.0EF148294.1 Populus trichocarpa x Populus deltoides clone WS01312_M14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458136.10.0light-inducible protein CPRF2
SwissprotQ990901e-118CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2K2ABZ10.0A0A2K2ABZ1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.27e-74bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]