PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G058900.1
Common NamePOPTR_0005s06040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 403aa    MW: 44395.7 Da    PI: 4.4459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G058900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.5e-4971351129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd elv++yLk+kv gkkl++ ++i+ev+iyk+ PwdLp k ++++++ +wyfF++++kkya+g r +r+t+ gyWk+tgkd
  Potri.005G058900.1   7 LPPGFRFHPTDVELVKYYLKRKVLGKKLHF-QAIAEVEIYKYAPWDLPgKsCLRTGDLKWYFFCPTEKKYASGVRMKRSTDIGYWKSTGKD 96 
                         79**************************99.89***************6347788899********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++   k+e+vg+ ktLvf++grapkg +tdWvm eyrle
  Potri.005G058900.1  97 RSIQY-KNEVVGMIKTLVFHTGRAPKGDRTDWVMYEYRLE 135
                         ****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-565157IPR003441NAC domain
PROSITE profilePS5100553.2477157IPR003441NAC domain
PfamPF023651.8E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGKKSSLPPG FRFHPTDVEL VKYYLKRKVL GKKLHFQAIA EVEIYKYAPW DLPGKSCLRT  60
GDLKWYFFCP TEKKYASGVR MKRSTDIGYW KSTGKDRSIQ YKNEVVGMIK TLVFHTGRAP  120
KGDRTDWVMY EYRLEEIELA DKGIAQDGYV LCVIFKKGPG PNNGAQYGEP FKEEEWGDDD  180
DDDEVEEVNF HKAILPAAMH TPAFMLPKNS NTSIAMSSYV PESTCTGLPV SCPSQTPTAC  240
TTLPMVSSND VASTEDHQVV HEYVNGGEAD SSAGISATAY QQPSNPKGSI LASSSSYVPE  300
NMCYPAYIPS MDASQVEAPQ IMDNGGDLLS PLAIFDNDNT ENVDFGGIAE PETDIYQNLG  360
DIASSGTGDY ISNSQYLMDP TLLDSNVGFL ELMDLDTPLY HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44615716165NO APICAL MERISTEM PROTEIN
1ut4_B2e-44615716165NO APICAL MERISTEM PROTEIN
1ut7_A2e-44615716165NO APICAL MERISTEM PROTEIN
1ut7_B2e-44615716165NO APICAL MERISTEM PROTEIN
3swm_A3e-44615719168NAC domain-containing protein 19
3swm_B3e-44615719168NAC domain-containing protein 19
3swm_C3e-44615719168NAC domain-containing protein 19
3swm_D3e-44615719168NAC domain-containing protein 19
3swp_A3e-44615719168NAC domain-containing protein 19
3swp_B3e-44615719168NAC domain-containing protein 19
3swp_C3e-44615719168NAC domain-containing protein 19
3swp_D3e-44615719168NAC domain-containing protein 19
4dul_A2e-44615716165NAC domain-containing protein 19
4dul_B2e-44615716165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.115510.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G058900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382846.10.0NAC domain-containing protein 82
SwissprotQ9FY821e-85NAC82_ARATH; NAC domain-containing protein 82
TrEMBLB9MZ910.0B9MZ91_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-83NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]