PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G063200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 426aa    MW: 48373.5 Da    PI: 9.0239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G063200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.4e-1899144147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ede+l ++v q+G+++W+ Ia++++ gR++k+c++rw++ 
  Potri.005G063200.1  99 RGHWRPAEDEKLRQLVDQYGPHNWNFIAEHLQ-GRSGKSCRLRWYNQ 144
                         899*****************************.************96 PP
2Myb_DNA-binding551.9e-17152195247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ +
  Potri.005G063200.1 152 RPFTEEEEERLLRAHHIQGNR-WASIARLFP-GRTDNAVKNHYHVV 195
                         69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.03994149IPR017930Myb domain
SuperFamilySSF466895.62E-2997192IPR009057Homeodomain-like
SMARTSM007178.4E-1698147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-26100152IPR009057Homeodomain-like
PfamPF139211.4E-17102162No hitNo description
CDDcd001671.01E-14102143No hitNo description
SMARTSM007172.6E-15150198IPR001005SANT/Myb domain
PROSITE profilePS5129419.649150200IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-20153198IPR009057Homeodomain-like
CDDcd001672.89E-5165196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLRSKNQCLY MYIYVSIHIL SCVYKKSDLS SVALKPIPSC SISLCLFIFL YLLKIFLVWG  60
DFCHNFAVVL EYLCEFKLHV MEDFRGSSSS DSGRTSCHRG HWRPAEDEKL RQLVDQYGPH  120
NWNFIAEHLQ GRSGKSCRLR WYNQLDPNIN KRPFTEEEEE RLLRAHHIQG NRWASIARLF  180
PGRTDNAVKN HYHVVMARRK RERCLTVHGK RSNFQIQYPS DHHHRNSSTN PGRNFGFFRP  240
QGSPDFGSKL GFQNNIIERA GNKIPMSSTN SSPSWTNISA STITNDSLSF DVFDAKRKDY  300
IHSSSSSIYP KGGPLALNES LHCTYHPSST IDGGDKYLNV VGQQIPNAKK VVPNNHFAFT  360
SYGDGYGSNK EKIIESQLVR LDSDHHDSAA LWKLPMASQQ EQGDHGGQVK NQDVAFIDFL  420
GVGIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-34991997107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G063200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707830.0AB970783.1 Populus tremula x Populus tremuloides PtxtMYB026 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306248.20.0transcription factor MYB97 isoform X1
TrEMBLA0A2I4KKW70.0A0A2I4KKW7_POPTR; MYB family protein
STRINGPOPTR_0005s06410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.14e-59myb domain protein 69