PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G065300.1
Common NamePOPTR_0005s06650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 212aa    MW: 24020.7 Da    PI: 6.281
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G065300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.52.7e-5537132297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqd+flPianv+rimkk +P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk+yl+kyre
  Potri.005G065300.1  37 KEQDHFLPIANVGRIMKKEIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLNKYRE 127
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Potri.005G065300.1 128 IEGEK 132
                         **996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5232156IPR009072Histone-fold
SuperFamilySSF471138.09E-4039157IPR009072Histone-fold
PfamPF008085.2E-2842106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-197088No hitNo description
PROSITE patternPS0068507389IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-1989107No hitNo description
PRINTSPR006153.0E-19108126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEDENHKNGT DGHSGESPES PCLKSCSSSS NNHNNSKEQD HFLPIANVGR IMKKEIPGNG  60
KISKDAKETV QECVSEFISF VTGEASDKCQ REKRKTINGD DIIWAITTLG FEDYVAPLKL  120
YLNKYREIEG EKLNVPKQQR MEHQSSQQHH QLEQEQNMIP PYTSIYSSSA LMSQPPSFMV  180
ADHKTYPLPF SPNSIQKHLQ HQDKVDPVEH W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4437127494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4437127494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G065300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306260.21e-158nuclear transcription factor Y subunit B-7
SwissprotQ9SIT93e-69NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLB9H4A91e-157B9H4A9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06650.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132492430
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.12e-66nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]