PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G066100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 257aa    MW: 29329.5 Da    PI: 8.5767
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G066100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA511.9e-16190223134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C+  kTp+WR gp g+ktLCnaCG++y   +
  Potri.005G066100.1 190 CTHCQIDKTPQWRIGPLGPKTLCNACGVRYNTGR 223
                         ******************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-11184234IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-13187244No hitNo description
Gene3DG3DSA:3.30.50.103.0E-13188221IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.95E-13189238No hitNo description
PfamPF003204.3E-14190223IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.908190219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MELYIAATFC LIREWLSFHG EIKLTPCRTS LEMPPKTEML NLNRARSLSS GQPQSSYVPM  60
GTPAHKRVVI LFVDFGQQLH EGPTSDDVCN VSDDFDWIGS ELSAPQDPIE CVTDVFDGFI  120
STNELSFLED FGDFLGKSEE EIKTTPSRDF KFGMTKKKPR SKRRSKQRAW PMKDFVFSAL  180
ENHEFRKRIC THCQIDKTPQ WRIGPLGPKT LCNACGVRYN TGRLLPEYRP AASPSFDQNK  240
HSNLHKQILR RRANLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G066100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0568128e-31KU056812.1 Salix suchowensis mitochondrion, complete genome.
GenBankKU1986358e-31KU198635.1 Salix purpurea mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457129.11e-157GATA transcription factor 7
TrEMBLA0A3N7G8B61e-155A0A3N7G8B6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06720.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1634779
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.19e-30GATA transcription factor 12