PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G075000.1
Common NamePOPTR_0005s07650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GeBP
Protein Properties Length: 504aa    MW: 55292.9 Da    PI: 4.6443
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G075000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573114.85.2e-36148242397
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                         +qr+ws+eDeiv+L G+i+f++++gk++s+d+ +fy fvk+s+ f++s++q+ +Kir LKkK+ ++v+k +sgk  +fsk+hd ++ el+k
  Potri.005G075000.1 148 SQRIWSDEDEIVILNGMIEFQNEKGKNSSADTGDFYGFVKESLCFNASNNQFANKIRMLKKKYFTDVEKNESGKYETFSKPHDLECVELAK 238
                         79***************************************************************************************** PP

              DUF573  94 kiWg 97 
                         kiWg
  Potri.005G075000.1 239 KIWG 242
                         ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.2E-30149242IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MARKRLIEEP PPAVSSSEEE EETDDKEEEP QNGTVKTQQN AAGEKSNDDD DGTEDDDDDD  60
EEDDDEEVEK KKPELPSKPS NPNSESDSDA DSEDTESTHP ASPSLSGFTI KPISPKRKPD  120
PKPEQPKKEK DVDDKKAKKG AGPGTGGSQR IWSDEDEIVI LNGMIEFQNE KGKNSSADTG  180
DFYGFVKESL CFNASNNQFA NKIRMLKKKY FTDVEKNESG KYETFSKPHD LECVELAKKI  240
WGAGGIVVGN ESNASKNSGK NVSGGGRGII LALAKLGSGE VNGKGKEASV KRGKRGSSEE  300
VSGEGKQGNL KKQKRVLSEE GDGGEEGNVK KGKRGLSEEA DGEGKGNDGK KERGKRVLSE  360
EVNGERKGKG GKKEKQAANN ELSGGEDANV KKQKRVVNGE WKESSMKKQK AVENEEVEGG  420
EGSEDLWDKY PYLRSSLLSE DLPEDVKERA MMMLGKVPEE KLVELEREWR SLMNAKLEFF  480
MMENDLIAKQ MKLALEALKS QDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G075000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2333701e-155CU233370.1 Populus EST from severe drought-stressed opposite wood.
GenBankCU2339851e-155CU233985.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306307.30.0probable transcription factor At1g11510
TrEMBLA0A2K2AD050.0A0A2K2AD05_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2317134
Representative plantOGRP4222523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-25DNA-binding storekeeper protein-related transcriptional regulator